References

Literature references grouped by individual topics.

Controlled Vocabulary Update Request

  • Aitchison, J., Bawden, D., & Gilchrist, A. (2004). Thesaurus Construction and Use: A Practical Manual (4th ed.). Europa Publications. 
  • Český normalizační institut (ČNI). (1995). Dokumentace. Pokyny pro vypracování a rozvíjení jednojazyčných tezaurů (ČSN 01 0193). 
  • European Molecular Biology Laboratory–European Bioinformatics Institute (EMBL–EBI). (n.d.). Ontology Lookup Service (OLS4). https://www.ebi.ac.uk/ols4/ 
  • OntoPortal Alliance. (2026). OntoPortal. https://ontoportal.org/ 
  • European Union (EU). (n.d.). EuroVoc. EU Vocabularies. https://op.europa.eu/web/eu-vocabularies/dataset/-/resource?uri=http://publications.europa.eu/resource/dataset/eurovoc 
  • Finto. (n.d.). About Finto. https://finto.fi/en/about?clang=fi 
  • Gene Ontology Consortium. (n.d.-a). Contributing to GO Terms. https://geneontology.github.io/docs/contributing-to-go-terms/ 
  • Gene Ontology Consortium. (n.d.-b). Gene Ontology Resource. https://geneontology.org/ 
  • Getty Research Institute. (2023). Contribute to Getty Vocabularies. https://www.getty.edu/research/tools/vocabularies/contribute.html 
  • GitHub. (n.d.). Configuring Issue Templates For Your Repository. https://docs.github.com/en/communities/using-templates-to-encourage-useful-issues-and-pull-requests/configuring-issue-templates-for-your-repository 
  • Library of Congress. (n.d.). The Library of Congress Subject Headings (LCSH) proposal process. https://www.loc.gov/aba/cataloging/subject/lcsh-process.html 
  • Mungall, C. (2021, July 3). How to Select and Request Terms from Ontologies. Douroucouli. https://douroucouli.wordpress.com/2021/07/03/how-select-and-request-terms-from-ontologies/ 
  • National Aeronautics and Space Administration (NASA). (n.d.). Suggest a Technology. TechPort. https://techport.nasa.gov/help/technologySuggestions 
  • National Information Standards Organization (NISO). (2010). Guidelines for the Construction, Format, and Management of Monolingual Controlled Vocabularies (ANSI/NISO Z39.19-2005 (R2010)). https://niso.org/publications/ansiniso-z3919-2005-r2010 
  • OBO Academy. (n.d.-a). Contributing to OBO Ontologies. OBook. https://oboacademy.github.io/obook/lesson/contributing-to-obo-ontologies/ 
  • OBO Academy. (n.d.-b). How to Request a New Term. OBook. https://oboacademy.github.io/obook/howto/term-request/ 
  • OBO Foundry. (n.d.-a). Textual Definitions (Principle 6). obofoundry.org 
  • OBO Foundry. (n.d.-b). Stability of Term Meaning (Principle 19). https://obofoundry.org/principles/fp-019-term-stability.html 

Building Controlled Vocabularies: From Principles to SKOS Implementation

TODO

Versioning Controlled Vocabularies: Approaches and Recommendations

Semantic Artefact Mapping: Methodology and Recommended Practices

  • Åkerström, W. N., Baumann, K., Corcho, O., David, R., Le Franc, Y., Madon, B., & Widmann, H. (2024). Developing and implementing the semantic interoperability recommendations of the EOSC Interoperability Framework. Zenodo. https://doi.org/10.5281/zenodo.10843882
  • Berners-Lee, T., Hendler, J., & Lassila, O. (2001). The Semantic Web. Scientific American, 284(5), 34–43. https://doi.org/10.1038/scientificamerican0501-34
  • David, J., Euzenat, J., Scharffe, F., & Trojahn dos Santos, C. (2011). The alignment API 4.0. Semantic Web, 2(1), 3–10. https://doi.org/10.3233/sw-2011-0028
  • Euzenat, J., & Le Duc, C. (2012). Methodological guidelines for matching ontologies. In M. C. Suárez-Figueroa, A. Gómez-Pérez, E. Motta, & A. Gangemi (Eds.), Ontology engineering in a networked world (pp. 257–278). Springer. https://doi.org/10.1007/978-3-642-24794-1_12
  • Euzenat, J., & Shvaiko, P. (2013). Ontology matching (2nd ed.). Springer. https://doi.org/10.1007/978-3-642-38721-0
  • Faria, D., Pesquita, C., Santos, E., Cruz, I. F., & Couto, F. M. (2014). AgreementMakerLight 2.0: Towards efficient large-scale ontology matching. CEUR Workshop Proceedings, 1272, 457–460.
  • Hepp, M. (2007). Ontology management: Semantic Web, Semantic Web Services, and business applications. Springer. https://doi.org/10.1007/978-0-387-69900-4
  • International Organization for Standardization. (2013). Information and documentation — Thesauri and interoperability with other vocabularies — Part 2: Interoperability with other vocabularies (ISO Standard No. 25964-2:2013). https://www.iso.org/standard/53658.html
  • Jiménez-Ruiz, E., & Cuenca Grau, B. (2011, October). LogMap: Logic-based and scalable ontology matching. In L. Aroyo, C. Welty, E. Alani, J. Taylor, A. Bernstein, L. Kagal, N. Noy, & E. Blomqvist (Eds.), The Semantic Web – ISWC 2011 (pp. 273–288). Springer. https://doi.org/10.1007/978-3-642-25073-6_18
  • JSKOS Project. (n.d.). JSKOS data format: Standard for Knowledge Organization System mappings. Retrieved August 13, 2026, from https://gbv.github.io/jskos/
  • Le Franc, Y., Coen, A., Loozen, N., & Parland-von Essen, J. (2025). D4.5 – Guidelines and methodology to create, document and share mappings and crosswalks (Deliverable D4.5). FAIR-IMPACT. https://doi.org/10.5281/zenodo.15111167
  • Mapping Commons. (n.d.). Simple Standard for Sharing Ontological Mappings (SSSOM) specification. Retrieved August 13, 2026, from https://mapping-commons.github.io/sssom/
  • National Information Standards Organization. (2010). Guidelines for the construction, format, and management of monolingual controlled vocabularies (ANSI/NISO Z39.19-2005 R2010). https://doi.org/10.3789/ansi.niso.z39.19-2005R2010
  • Pour, M. A. N., Blomqvist, E., Cotovio, P. G., Coulet, A., Ferraz, L., Hertling, S., Hitzler, P., II, C. C., Jonquet, C., Kalinowski, A., Khrouf, S., Krotzsch, M., Li, Y., Paulheim, H., Pesquita, C., Portisch, J., Saveta, T., Shvaiko, P., Trojahn, C., … Zhou, L. (2025). Results of the Ontology Alignment Evaluation Initiative 2025. CEUR Workshop Proceedings, 4144, 105–139.
  • W3C OWL Working Group. (2009). OWL 2 Web Ontology Language profiles (W3C Recommendation). World Wide Web Consortium. https://www.w3.org/TR/owl2-overview/
  • Wilkinson, M. D., Dumontier, M., Aalbersberg, I. J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.-W., da Silva Santos, L. O. B., Bourne, P. E., Bouwman, J., Brookes, A. J., Clark, T., Crosas, M., Dillo, I., Dumon, O., Edmunds, S., Evelo, C. T., Finkers, R., … Mons, B. (2016). The FAIR Guiding Principles for scientific data management and stewardship. Scientific Data, 3, Article 160018. https://doi.org/10.1038/sdata.2016.18
  • World Wide Web Consortium. (2009). SKOS Simple Knowledge Organization System reference (W3C Recommendation). https://www.w3.org/TR/skos-reference/
  • Zamazal, O., & Svátek, V. (2017). The ten-year OntoFarm and its fertilization within the onto-sphere. Journal of Web Semantics, 43, 46–53. https://doi.org/10.1016/j.websem.2017.01.001